Publications

Longfellow Bridge

2024

S. Feldmann, Guest editorial. Advanced Optical Materials, Volume 12, Issue 8, 10-Year Anniversary Special Issue: Photophysics of Perovskites – from Bulk to Nano (March 14, 2024).

F. Furlan, J. M. Moreno-Naranjo, N. Gasparini, S. Feldmann, J. Wade, M. J. Fuchter, Chiral materials and mechanisms for circularly polarized light-emitting diodes. Nature Photonics (2024).

T.S. Kim, C.R. O’Connor & C. Reece, Interrogating site dependent kinetics over SiO2 -supported Pt nanoparticles. Nature Communications 15, 2074 (2024).

P. Suchandra, S. Raayai-Ardakani, Impact of bio-inspired V-formation on flow past arrangements of non-lifting objects. Physics of Fluids, Volume 36, Issue 1 (2024). Also covered in American Institute of Physics science newsletter Scilight.

2023

S. Fu, S. Raayai-Ardakani Double-light-sheet, consecutive-overlapping particle image velocimetry for the study of boundary layers past opaque objects. Exp Fluids 64, 182 (2023).

W. R. Kitzmann, J. Freudenthal, A.-P. M. Reponen, Z. A. VanOrman, S. Feldmann. Fundamentals, Advances, and Artifacts in Circularly Polarized Luminescence (CPL) Spectroscopy. Advanced Materials 2302279 (2023). Highlighted as Cover.

W. M. Runowski*, P. Woźny, I. R. Martín, K. Soler-Carracedo, T. Zheng*, H. Hemmerich, F. Rivera-López, J. Moszczyński, P. Kulpiński, S. Feldmann. Multimodal Optically Nonlinear Nanoparticles Exhibiting Simultaneous Higher Harmonics Generation and Upconversion Luminescence for Anticounterfeiting and 8-bit Optical Coding. Advanced Functional Materials 2307791 (2023).

W. R. Kitzmann, D. Hunger, A.-P. M. Reponen, C. Förster, R. Schoch, M. Bauer, S. Feldmann, J. van Slageren, K. Heinze. Electronic Structure and Excited-State Dynamics of the NIR-II Emissive Molybdenum(III) Analogue to the Molecular Ruby. Inorganic Chemistry 62, 39, 15797 (2023). Highlighted as Featured Article and Cover.

A. Stadlbauer, L. Eyre, A. Biewald, F. Rauh, M. W. Heindl, S. Liu, J. Zerhoch, S. Feldmann, A. Hartschuh, F. Deschler. Photoexcitation Control of Excitation Relaxation in Mixed-Phase Ruddlesden-Popper Hybrid Organic-Inorganic Lead-Iodide Perovskites. Advanced Optical Materials 2301331 (2023).

S. Liu, M. Kepenekian, S. Bodnar, S. Feldmann, M. W. Heindl, N. Fehn, J. Zerhoch, A. Shcherbakov, A. Poethig, Y. Li, U. W. Paetzold, A. Kartouzian, I. D. Sharp, C. Katan, J. Even, F. Deschler. Bright circularly polarized photoluminescence in chiral layered hybrid lead-halide perovskites. Science Advances 9, eadh5083 (2023).

S. Feldmann. Taming the tiniest of lasers: Electrically pumped amplified spontaneous emission from nanocrystals. Matter 8 (6), 2568 (2023).

Regeni I.I, Chowdhury R., Terlinden K., Horiuchi S., Holstein J.J, Feldmann S., Clever G.H. Engineering Soluble Diketopyrrolopyrrole Chromophore Stacks from a Series of Pd(II)-based Ravels. Angewandte Chemie International Edition e202308288 July 2023.

Ashoka, Nagane, Strkalj, Sharma, Roose, Sneyd, Sung, MacManus-Driscoll, Stranks, Feldmann*, Rao*. Local symmetry breaking drives picosecond spin domain formation in polycrystalline halide perovskite filmsNature Materials July(2023).

Fuchter M, Freedman D.E, Kotov N.A, Moon J, Beard M.C, Feldmann S. Materials for chiral light control. Nature Reviews Materials. March 2023.

Heckelmann I, Lu Z, Prentice J.C.A, Auras F, Ronson T.K, Friend R.H, Nitschke J.R, Feldmann S. Supramolecular Self-Assembly as a Tool to Preserve Electronic Purity of Perylene Diimide Chromophores. Angew. Chem. Int. Ed. 2023 e202216729, January 2023

2022

Raayai-Ardakani S. A polynomial framework for design of drag reducing periodic two-dimensional textured surfaces. International Journal of Heat and Fluid Flow, Vol. 98, December 2022

Cho C, Feldmann S, Yeom KM, Jang YW, Kahmann S, Huang JY, Yang T – CJ, Taher Khayyat MN, Wu YR, Choi M, Noh JH, Stranks SD & Greenham NC. Efficient vertical charge transport in polycrystalline halide perovskites revealed by four-dimensional tracking of charge carriers. Nature Materials 21, 1388-1395 (2022).

Ahmed GH, Liu Y, Bravic I, Ng X, Heckelmann, Narayanan P, Fernandez MS, Monserrat B, Congreve DN, Feldmann S. Luminescence Enhancement Due to Symmetry Breaking in Doped Halide Perovskite Nanocrystals. Journal of the American Chemical Society, August 17, 2022

Kurtz DA, Hunter BM. Forming O-O Bonds Science Direct, Joule 2022

Thomas-Colwell J, Sookezian A, Kurtz DA, Kallick J, Henling LM, Stich TA, Hill MG, Hunter BM. Tuning Cobalt (II) Phosphine Complexes to be Axially Ambivalent. Inorganic Chemistry 2022

Munoz AW, Hoyer E, Schumacher K, Grognot M, Taute KM, Hacker SM, Sieber SA, Jung K. Eukaryotic catecholamine hormones influence the chemotactic control of Vibrio campbellii by binding to the coupling protein CheW. PNAS 2022;119(12)

2021

Pizl M, Hunter BM, Sazanovich IV, Towrie M, Gray HB, Zalis S, Vlcek A. Excitation-Wavelength-Dependent Photophysics of d8 d8 Di-isocyanide Complexes. ACS Inorganic Chemitry 2021

Kurtz DA, Zhang J, Sookezian A, Kallick J, Hill MG, Hunter BM. A Cobalt Phosphine Complex in Five Oxidation States. American Chemistry Society, Inorganic Chemistry 2021

Zhang J, Winkler JR, Gray HB, Hunter BM. Mechanism of Nickel-Iron Water Oxidation Electrocatalysts. ACS energy& fuels 2021

Karatok M, Madix R, van der Hoeven J, Aizenberg J, Reece C. Quantifying oxygen induced surface enrichment of a dilute PdAu alloy catalyst. Catalysis Science & Technology 2021

Grognot M, Mittal A, Mah’Moud M, Taute KM. Vibrio cholerae motility in aquatic and mucus-mimicking environments. AMS Journals, Applied and Environmental Microbiology 2021

Grognot M, Taute KM. A multiscale 3D chemotaxis assay reveals bacterial navigation mechanisms. Communications Biology 2021

Dittmer J, Brucker RM. When your host shuts down: larval diapause impacts host-microbiome interaction in Nasonia vitripennis. Microbiome 2021

Grognot M, Taute KM. More than propellers: how flagella shape bacterial motility behaviors. Current Opinion in Microbiology 2021;61(June 2021):73-81

2020

Horowitz P, Hill W. The Art of Electronics. 4th ed. Cambridge: Cambridge University Press; 2020

Tao Y. Forging Aspirant Undergraduate Scientists and Engineers into Steller Researchers. Matter 2020;3(5):1383-1386.

Trepka K, Hauert R, Cancellieri C, Tao Y. A Robust Metal Oxide Thin Film with Saturation Magnetization Exceeding 2 Telsa. SSRN 2020

Trepka K, Tao Y. Magnetic characterization of rare-earth oxide nanoparticles. Applied Physics Letters 2020;117(12)

Kurtz DA, Rossman GR, Hunter BM. The Nature of the Mn(III) Color Centers in Elbaite Tourmalines. Inorganic Chemistry 2020;59(14):9618-9626

Gude S, Pinçe E, Taute KM, Seinen A-B, Shimizu TS, Tans SJ. Bacterial coexistence driven by motility and spatial competition. Nature 2020;(578):588-592.

Wang G-H, Berdy BM, Velasquez O, Jovanovic N, Alkhalifa S, Minibiole KPC, Brucker R. Changes in Microbiome Confer Multigenerational Host Resistance after Sub-toxic Pesticides Exposure. Cell Host & Microbe 2020;(27):213-224

Mathis MW, Mathis A. Deep learning tools for the measurement of animal behavior in neuroscience. Current Opinion in Neurobiology 2020;60:1-11.

2019

Sayler RI, Hunter BM, Fu W, Gray HB, Britt RD. EPR spectroscopy of iron- and nickel-doped [ZnAI]-layered double hydroxides: modeling active sites in heterogenous water oxidation catalysts. Journal of the American Chemical Society 2019

Marques JC, Li M, Schaak D, Robson DN, Li JM. Internal state dynamics shape brained activity and foraging behavior. Nature 2019;(577):239-243

Pun AB, Sanders SN, Sfeir MY, Campos LM, Congreve DN. Annihilator dimers enhance triplet fusion upconversion. Chemical Science 2019;10(14):3969-3975

Sanders SN, Gangishetty MK, Sfeir MY, Congreve DN. Photon Upconversion in Aqueous Nanodroplets. Journal of the American Chemical Society 2019;141(23):9180-9184

Nath T, Mathis A, Chen AC, Bethge M, Mathis MW. Using DeepLabCut for 3D markerless pose estimation across species and behaviors. Nature Protocols 2019

Gangishetty MK, Sanders SN, Congreve DN. Mn2+ Doping Enhances the Brightness, Efficiency, and Stability of Bulk Perovskite Light-Emitting Diodes. ACS Photonics 2019;6(5):1111-1117

Pun AB, Campos LM, Congreve DN. Tunable Emission from Triplet Fusion Upconversion in Diketopyrrolopyrroles. Journal of the American Chemical Society 2019

Ravetz BD, Pun AB, Churchill EM, Congreve DN, Rovis T, Campos LM. Photoredox catalysis using infrared light via triplet fusion up conversion. Nature 2019;565:343-346

Peng Y, Jiang K, Hill W, Lu Z, Yao H, Wang H. Large-Scale, Low-Cost, and High-Efficiency water-Splitting System for Clean H2 Generation. ACS Applied Materials & Interfaces 2019;11(4):3971-3977.

2018

Mathis A, Mamidanna P, Cury KM, Abe T, Murthy VN, Mathis MW, Bethge M. DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nature Neuroscience 2018;21:1281-1289

Hou S, Gangishetty MK, Quan Q, Congreve DN. Efficient Blue and White Perovskite Light-Emitting Diodes via Manganese Doping. Joule 2018

Gangishetty MK, Hou S, Quan Q, Congreve DN. Reducing Architecture Limitations for Efficient Blue Perovskite Light-Emitting Diodes. Advanced Materials 2018

Jiang K, Siahrostami S, Zheng T, Hu Y, Hwang S, Stavitski E, Peng Y, Dynes J, Gangishetty M, Su D, Attenkofer K, Wang H. Isolated Ni single atoms in graphene nanosheets for high-performance CO2 reduction. Energy & Environmental Science 2018;(2):225-458

Jiang K, Sandberg RB, Akey AJ, Liu X, Bell DC, Nøskov JK, Chan K, Wang H. Metal ion cycling of Cu foil for selective C-C coupling in electrochemical CO2 reduction. Nature Catalysis 2018

2017

Jiang K, Siahrostami S, Akey AJ, Li Y, Lu Z, Lattimer J, Hu Y, Stokes C, Gangishetty M, Chen G, Zhou Y, Hill W, Cai W-B, Bell D, Chan K, Nørskov JK, Cui Y, Wang H. Transition-Metal Single Atoms in a Graphene Shell as Active Centers for Highly Efficient Artificial Photosynthesis. Chem 2017;3(1-11)

Siahrostami S, Jiang K, Karamad M, Chan K, Wang H, Nørskov J. Theoretical Investigations into Defected Graphene for Electrochemical Reduction of CO2. ACS Sustainable Chemistry & Engineering 2017

Jiang K, Kharel P, Peng Y, Gangishetty MK, Lin H-YG, Stavitski E, Attenkofer K, Wang H. Silver Nanoparticles with Surface-Bonded Oxygen for Highly Selective CO2 Reduction. ACS Sustainable Chemistry & Engineering 2017

Kim DH, Kim J, Marques JC, Grama A, Hildebrand DGC, Gu W, Li JM, Robson DN. Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish. Nature Methods 2017

Jiang K, Wang H, Cai W-B, Wang H. Li Electrochemical Tuning of Metal Oxide for Highly Selective CO2 Reduction. ACS Nano 2017;(DOI: 10.1021)

Liang F, Guo Y, Hou S, Quan Q. Photonic-plasmonic hybrid single-molecule nano sensor measures the effect of fluorescent labels on DNA-protein dynamics. Sciences Advances 2017;3(5)

Hou S, Guo Y, Tang Y, Quan Q. Synthesis and Stabilization of Colloidal Perovskite Nanocrystals by Multidentate Polymer Micelles. ACS Applied Materials & Interfaces 2017

Novakova E, Woodhams DC, Rodriguez-Ruano SM, Brucker RM, Leff JW, Maharaj A, Knight R, Scott J. Mosquito Microbiome Dynamics, a Background for Prevalence and Seasonality of West Nile Virus. Frontiers in Microbiology 2017;(1664-302X)

Saulsberry A, Pinchas M, Noll A, Lynch JA, Bordenstein SR, Brucker RM. Establishment of F1 hybrid mortality in real time. BMC Evolutionary Biology 2017;17.1

Brooks AW, Kohl KD, Brucker RM, van Opstal EJ, Bordenstein SR. Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History. PLOS Biology 2017;15.1(e1002587):1-29

Ouyang M, Hill W, Lee JH, Hur SC. Microscale Symmetrical Electroporator Array as a Versatile Molecular Delivery System. Scientific Reports 2017;7:11.

2016

Lin Z, Guo H, Cao Y, Zohrabian S, Zhou P, Ma Q, VanDusen N, Guo Y, Zhang J, Stevens SM, Liang F, Quan Q, van Gorp P R, Li A, dos Remedios C, He A, Bezzerides V J, Pu W T. Acetylation of \VGLL4\ Regulates Hippo-YAP Signaling and Postnatal Cardiac Growth. Developmental Cell 2016;39(4):466 – 479.

Richmond BW, Brucker RM, Han W, Du R-H, Zhang Y, Cheng D-S, Gleaves L, Abdolrasulinia R, Polosukhina D, Clark PE, Bordenstein SR, Blackwell TS, Polosukhin VV. Airway bacteria drive a progressive COPD-like phenotype in mice with polymeric immunoglobulin receptor deficiency. Nature Communications 2016;7:11240.

Theis KR, Dheilly NM, Klassen JL, Brucker RM, Baines JF, Bosch TCG, Cryan JF, Gilbert SF, Goodnight CJ, Lloyd EA, Sapp J, Vandenkoornhuyse P, Zilber-Rosenberg I, Rosenberg E, Bordenstein SR. Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes. mSystems 2016;1(2)

Rebollar EA, Antwis RE, Becker MH, Belden LK, Bletz MC, Brucker RM, Harrison XA, Hughey MC, Kueneman JG, Loudon AH, McKenzie V, Medina D, Minbiole KPC, Rollins-Smith LA, Walke JB, Weiss S, Woodhams DC, Harris RN. Using “omics” and integrated multi-omics approaches to guide probiotic selection to mitigate chytridiomycosis and other emerging infectious diseases. Frontiers in Microbiology 2016;7(68)

2015

Lacoste A MB, Schoppik D, Robson D N, Haesemeyer M, Portugues R, Li J M, Randlett O, Wee C L, Engert F, Schier A F. A Convergent and Essential Interneuron Pathway for Mauthner-Cell-Mediated Escapes. Current Biology 2015;25(11):1526 – 1534.

Choubey S, Kondev J, Sanchez A. Deciphering transcriptional dynamics in vivo by counting nascent mRNA molecules. PLOS Computational Biology 2015;11:e1004345.

Axelrod K, Sanchez A, Gore J. Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network. eLife 2015;4:e07935.

Flynn CR, Albaugh VL, Cai S, Cheung-Flynn J, Williams PE, Brucker RM, Bordenstein SR, Guo Y, Wasserman DH, Abumrad NN. Bile diversion to the distal small intestine has comparable metabolic benefits to bariatric surgery. Nature communications 2015;6

Lacoste AMB, Schoppik D, Robson DN, Haesemeyer M, Portugues R, Li JM, Randlett O, Wee CL, Engert F, Schier AF. A Convergent and Essential Interneuron Pathway for Mauthner-Cell-Mediated Escapes. Current biology 2015;25(11):1526-1534.

Quan Q, Zhang Y. Lab-on-a-Tip (LOT): Where Nanotechnology can Revolutionize Fibre Optics. Nanobiomedicine 2015;2(3):1-5.

Wang C, Quan Q, Kita S, Li Y, Loncar M. Single-nanoparticle detection with slot-mode photonic crystal cavities. Appl. Phys. Lett. 2015;106:261105.

Niu N, Woolf A, Wang D, Zhu T, Quan Q. Ultra-low threshold gallium nitride photonic crystal nanobeam laser. App. Phys. Lett. 2015;106:231104.

Horowitz P, Hill W. The Art of Electronics. 3rd ed. Cambridge: Cambridge University Press; 2015.

2014

Bureka MJ, Chu Y, Liddy SZ, Patel P, Rochman J, Meesala S, Hong W, Quan Q, Lukin M D, Loncar M. High quality-factor optical nanocavities in bulk single-crystal diamond. Nature Communications 2014;5:5718.

Yang D, Kita S, Liang F, Wang C, Tian H, Ji Y, Loncar M, Quan Q. High sensitivity and high Q-factor nanoslotted parallel quadrabeam photonic crystal cavity for real-time and label-free sensing. App. Phys. Lett 2014;105:063118.

Hong W, Liang F, Schaak D, Loncar M, Quan Q. Nanoscale label-free bioprobes to detect intracellular proteins in single living cells. Scientific Reports 2014;4:6179.

Giuliano CB, Zhang R, Wilson LG. Digital inline holographic microscopy (DIHM) of weakly-scattering subjects. JoVE 2014;2014(84):e50488.

Colin R, Zhang R, Wilson LG. Fast, high-throughput measurement of collective behavior in a bacterial population. Journal of the Royal Society, Interface 2014;11(98): 20140486.

Martinez VA, Schwarz-Linek J, Reufer M, Wilson LG, Morozov AN, Poon WCK. Flagellated Bacterial Motility in Polymer Solutions. Proceedings of the National Academy of Sciences 2014;111(50):17771-17776.

Savo S, Zhou Y, Castaldi G, Moccia M, Galdi V, Ramanathan S, Sato Y. Reconfigurable anisotropy and functional transformations with metamaterial electric circuits. arxiv.org 2014;

Vickers DAL, Ouyang M, Choi CH, Hur SJC. Direct drug cocktail analyses using microscale vortex-assisted electroporation. Analytical Chemistry 2014;86:10099-10105.Abstract Vickers DAL, Hur SJC. Microscale vortex-assisted electroporator for sequential molecular delivery. JoVE 2014;90(e51702)

Chen A, Sanchez A, Dai L, Gore J. Dynamics of a producer-parasite ecosystem on the brink of collapse. Nature Communications 2014;5:3713.

Moccia M, Castaldi G, Savo S, Sato Y, Galdi V. Independent manipulation of heat and electrical current via bifunctional metamaterials. Physical Review X 2014;4

Schonbrun E, Möller G, Caprio GD. Polarization encoded color camera. Optics Letters. 2014;39(6):1433-1436.

Sato Y. Sagnac-based rotation sensing with superfluid helium quantum interference devices. Comptes Rendus de l’Academie des Sciences 2014;15(10):898-906.

Harrington KI, Sanchez A. Eco-evolutionary dynamics of complex social strategies in microbial communities. Communicative & Integrative Biology 2014;7(1)

Schonbrun E, Malka R, Caprio GD, Schaak D, Higgins JM. Quantitative absorption cytometry for measuring red blood cell hemoglobin mass and volume. Journal of Cytometry 2014;

Packard R, Sato Y. Superfluid helium quantum interference devices: principles & performance. In: Journal of Physics: Conference Series. 2014

Sato Y. Manipulation of heat flow. In: McGraw-Hill Yearbook of Science & Technology. McGraw-Hill Education; 2014

Webster A, Vollmer F, Sato Y. Probing biomechanical properties with a centrifugal force quartz crystal microbalance. Nat. Commun. 2014;5:5284.

2013

Hausmann BJM, Shields BJ, Quan Q, Chu Y, de Leon NP, Evans M, Burek J, Zibrov AS, Markham M, Twitchen DJ, Park H, Lukin MD, Loncar M. Coupling of NV centers to photonic crystal nanobeams in diamond. Nano Letters 2013;13:5791.

Liang F, Clarke NA, Patel R, Loncar M, Quan Q. Scalable nanobeam photonic sensors for high sensitivity protein detection. Optics Express 2013;21:32306.

Quan Q, Floyd D, Burgess IB, Deotare PB, Frank IW, Yang SKY, Ilic R, Loncar M. Single particle detection in CMOS compatible photonic crystal nanobeam cavities . Optics Express 2013;2013(21):32225.

Wilson LG, Carter LM, Reece SE. High-speed holographic microscopy of malaria parasites reveals ambidextrous flagellar waveforms. Proceedings of the National Academy of Sciences 2013;110 (47):18769-18774.

Moccia M, Castaldi G, Galdi V, Savo S, Sato Y. Transformation Multiphysics. In: Transformation Wave Physics. Pan Stanford Publishing; 2013

Gorthi SS, Schaak D, Schonbrun E. Fluorescence imaging of flowing cells using a temporally coded excitation. Optics Express 2013;21:5164-517.
Clemente CJ, Richards CT. Built for rowing: frog muscle is tuned to limb morphology to power swimming. Journal of the Royal Society Interface 2013;10Abstract 2013_clemente_j_r_soc_interface.pdf

Caprio GD, Schaak D, Schonbrun E. Hyperspectral fluorescence microfluidic microscopy. Biomedical Optics Express 2013;4:1486-1493.

Clemente CJ, Richards CT. Muscle power limits speed: muscle function and hydrodynamics constrains power in swimming frogs. Nature Communications 2013;4

Yun H, Hur SC. Sequential multi-molecule delivery using vortex-assisted electroporation. Lab on a Chip 2013;13:2764-2772.

Sato Y. Viewpoint: A SQUID analog with a Bose-Einstein condensate. Physics 2013;6:123

Gaudry Q, Hong EJ, Kain J, de Bivort BL, Wilson RI. Asymmetric neurotransmitter release enables rapid odour lateralization in Drosophila. Nature 2013;493:424-8.

Gorthi SS, Schaak D, Schonbrun E. Fluorescence imaging of flowing cells using a temporally coded excitation. Opt Express 2013;21(4):5164-70.

Spicer R, Tisdale-Orr TE, Talavera C. Auxin-responsive DR5 promoter coupled with transport assays suggest separate but linked routes of auxin transport during woody stem development in Populus. PLOS ONE 2013

SatoY. On the manipulation of heat current with thermal metamaterials. Parity (Japan) 2013;2:46.

Sato Y. Manipulation of heat flow. In: McGraw-Hill Yearbook of Science & Technology. 2013 p. in press.

2012

Collins B, Kane EA, Reeves DC, Akabas MH, Blau J. Balance of activity between LN(v)s and glutamatergic dorsal clock neurons promotes robust circadian rhythms in Drosophila. Neuron 2012;74(4):706-718.

Gershow M, Berck M, Matthew D, Luo L, Kane EA, Carlson J, Samuel A. Controlling airborne chemical cues for studying navigation in small animals. Nature Methods 2012;

Song E, de Bivort B, Dan C, Kunes S. Determinants of the Drosophila odorant receptor pattern. Dev Cell 2012;22:363-76.

Raz, Graham S, and, Cohen JH, and, de Bivort A, and, Grishkan BL, and, Nevo I, and, Eviatar. Growth and Asymmetry of Soil Microfungal Colonies from Evolution Canyon, Lower Nahal Oren, Mount Carmel, Israel. PLoS ONE 2012;7:e34689.

Kain JS, Stokes C, de Bivort BL. Phototactic personality in fruit flies and its suppression by serotonin and white. Proc Natl Acad Sci U S A 2012;109:19834-9.

Richards CT, Clemente CJ. A bio-robotic platform for integrating internal and external mechanics during muscle-powered swimming. Bioinspir Biomim 2012;7(1):016010.

Clemente CJ, Richards CT. Determining the influence of muscle operating length on muscle performance during frog swimming using a bio-robotic model. Bioinspiration & Biomimetics 2012;7:036018.

Richards CT, Sawicki GS. Elastic recoil can either amplify or attenuate muscle-tendon power, depending on inertial vs. fluid dynamic loading. J Theor Biol 2012;313:68-78.

Schonbrun E, Gorthi SS, Schaak D. Microfabricated multiple field of view imaging flow cytometry. Lab Chip 2012;12(2):268-73.

Gorthi SS, Schonbrun E. Phase imaging flow cytometry using a focus-stack collecting microscope. Opt Lett 2012;37(4):707-9.

Carraro N, Tisdale-Orr TE, Clouse RM, Knöller AS, Spicer R. Diversification and Expression of the PIN, AUX/LAX, and ABCB Families of Putative Auxin Transporters in Populus. Front Plant Sci 2012;3:17.

Wilson L, Zhang R. 3D Localization of weak scatterers in digital holographic microscopy using Rayleigh-Sommerfeld back-propagation. Opt. Express 2012;20:16735-16744.

Narayana S, Sato Y. DC magnetic cloak. Adv Mater 2012;24(1):71-4.

Martinez VA, Besseling R, Croze OA, Tailleur J, Reufer M, Schwarz-Linek J, Wilson LG, Bees MA, Poon WCK. Differential dynamic microscopy: a high-throughput method for characterizing the motility of microorganisms. Biophys J 2012;103(8):1637-47.

Narayana S, Sato Y. Heat flux manipulation with engineered thermal materials. Phys Rev Lett 2012;108(21):214303.

Sahin O, Yong EH, Driks A, Mahadevan L. Physical basis for the adaptive flexibility of Bacillus spore coats. J R Soc Interface 2012;9(76):3156-60.

Sato Y, Packard RE. Superfluid helium interferometers. 2012;10:31.

Sato Y, Packard RE. Superfluid helium quantum interference devices: physics and applications. Rep Prog Phys 2012;75(1):016401.

Sato Y, Packard RE. Superfluid helium quantum interference devices: present status & future prospects. In: Journal of Physics: Conference Series 400. 2012 p. 052030.

Halvorsen K, Wong WP. Binary DNA nanostructures for data encryption. PLoS One 2012;7(9):e44212.

Zhao W, Cui CH, Bose S, Guo D, Shen C, Wong WP, Halvorsen K, Farokhzad OC, Teo GSL, Phillips JA, Dorfman DM, Karnik R, Karp JM. Bioinspired multivalent DNA network for capture and release of cells. Proc Natl Acad Sci U S A 2012;109(48):19626-31.

Pelletier J, Halvorsen K, Ha B-Y, Paparcone R, Sandler SJ, Woldringh CL, Wong WP, Jun S. Physical manipulation of the Escherichia coli chromosome reveals its soft nature. Proc Natl Acad Sci U S A 2012;109(40):E2649-56.

2011

Giribet G, Sharma PP, Benavides LR, Boyer SL, Clouse RM, de Bivort BL, Dimitrov D, Kawaguchi GY, Murienne J, Schwendinger PJ. Evolutionary and biogeographical history of an ancient and global group of arachnids (Arachnida: Opiliones: Cyphophthalmi) with a new taxonomic arrangement. Biological Journal of the Linnean Society 2011;105:92-130.

Richards CT. Building a robotic link between muscle dynamics and hydrodynamics. J Exp Biol 2011;214(Pt 14):2381-9.

Schonbrun E, Seo K, Crozier KB. Reconfigurable imaging systems using elliptical nanowires. Nano Lett 2011;11(10):4299-303.

Wrubel J, Gabrielse G, Klothammer WS, Larochelle P, McConnell R, Richerme P, Grzonka D, Oelert W, Sefzick T, Zielinski M, Borbely JS, George MC, Hessels EA, Storry CH, Weel M, Mullers A, Walz J, Speck A. Pumped helium system for cooling positron and electron traps to 1.2 K. In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment. 2011 p. 232–240.

Yang KJ, Noh H, Rooks MJ, Solomon GS, Vollmer F, Cao H. Lasing in localized modes of a slow light photonic crystal waveguide. Applied Physics Letters 2011;98:241107.

Wilson LG, Harrison AW, Poon WCK, Puertas AM. Microrheology and the fluctuation theorem in dense colloids. EPL 2011;93(5):58007.

Dong M, Sahin O. A nanomechanical interface to rapid single-molecule interactions. Nat Commun 2011;2:247.

Narayana S, Sato Y. Quantum coherence in a superfluid Josephson junction. Phys Rev Lett 2011;106(5):055302.

Wilson LG, Poon WCK. Small-world rheology: an introduction to probe-based active microrheology. Phys Chem Chem Phys 2011;13(22):10617-30.

Narayana S, Sato Y. Superfluid quantum interference in multiple-turn reciprocal geometry. Phys Rev Lett 2011;106(25):255301.

Mandal P, Speck A, Ko C, Ramanathan S. Terahertz spectroscopy studies on epitaxial vanadium dioxide thin films across the metal-insulator transition. Opt Lett 2011;36(10):1927-9.

Pinto N, Cox DD. GPU Metaprogramming: A Case Study in Biologically-Inspired Computer Vision. In: GPU Computing Gems, Jade Edition. Morgan Kaufmann Publishers; 2011

Pinto N, Cox DD. Beyond Simple Features: A Large-Scale Feature Search Approach to Unconstrained Face Recognition. IEEE Automatic Face and Gesture Recognition 2011

Halvorsen K, Schaak D, Wong WP. Nanoengineering a single-molecule mechanical switch using DNA self-assembly. Nanotechnology 2011;22(49):494005.

Pinto N, Stone Z, Zickler T, Cox DD. Scaling-up Biologically-Inspired Computer Vision: A Case-Study on Facebook. IEEE Computer Vision and Pattern Recognition, Workshop on Biologically Consistent Vision 2011

2010

Clouse R, de Bivort BL, Giribet G. Phylogenetic signals in morphometric data. Cladistics 2010;27:1-4.

de Bivort BL, Clouse RM, Giribet G. A morphometrics-based phylogeny of the temperate Gondwanan mite harvestmen (Opiliones, Cyphophthalmi, Pettalidae). Journal of Zoological Systematics and Evolutionary Research 2010;In press

de Bivort BL, Giribet G. A systematic revision of South African Pettalidae (Arachnida : Opiliones : Cyphophthalmi) based on a combined analysis of discrete and continuous characters with the description of seven new species. Invertebrate Systematics 2010;24:371-406.

Richards CT. Kinematics and hydrodynamics analysis of swimming anurans reveals striking inter-specific differences in the mechanism for producing thrust. J Exp Biol 2010;213(4):621-34.

Roy S, Prasad M, Topolancik J, Vollmer F. All-optical switching with bacteriorhodopsin protein coated microcavities and its application to low power computing circuits. Journal of Applied Physics 2010;107:053115.

Gabrielse G, Klothammer WS, McConnell R, Richerme P, Wrubel J, Kalra R, Novitski D, Grzonka D, Oelert W, Sefzick T, Zielinski M, Borbely JS, George MC, Hessels EA, Storry CH, Weel M, Mullers A, Walz J, Speck A. Centrifugal Separation of Antiprotons and Electrons. Phys. Rev. Lett. 2010;105:213002.

Spicer R, Groover A. Evolution of development of vascular cambia and secondary growth. New Phytol 2010;186(3):577-92.Abstract 2010_spicer_rev.new_phytologist.pdf Speck A, Mandal P. Half-cycle-pulse-train induced state redistribution of Rydberg atoms. Physical Review A 2010;81:013401.

Okada K, Bartolini F, Deaconescu AM, Moseley JB, Dogic Z, Grigorieff N, Gundersen GG, Goode BL. Adenomatous polyposis coli protein nucleates actin assembly and synergizes with the formin mDia1. J Cell Biol 2010;189(7):1087-96.

Narayana S, Sato Y. Compact miniature high-resolution thermometer. IEEE Transactions on Applied Superconductivity 2010;20:2402.

Narayana S, Sato Y. Direct observation of dynamical bifurcation in a superfluid Josephson junction. Phys Rev Lett 2010;105(20):205302.Abstract 2010_narayana_prl.pdf Barry E, Dogic Z. Entropy driven self-assembly of nonamphiphilic colloidal membranes. Proc Natl Acad Sci U S A 2010;107(23):10348-53.

Sato Y. Fiske-amplified superfluid interferometry. Physical Review B 2010;81:172502. 2010_sato_pr.pdf Fischer P, Ghosh A, Premasiri WR, Ziegler LD. Nanostructured Plasmonic Surfaces for Surface Enhanced Raman Scattering of Bacteria. XXII International Conference on Raman Spectroscopy 2010;1267:994-995.

Pinto N, Cox DD. An Evaluation of the Invariance Properties of a Biologically-Inspired System for Unconstrained Face Recognition. ICST Conference on Biologically Inspired Network, Information, and Computing Systems 2010; Sriram V, Tsoi K, Luk W, Cox DD. A Design-Space Exploration of Biologically-Inspired Visual Object Recognition Algorithms Using CPUs, GPUs and FPGAs. Many-Core and Reconfigurable Supercomputing 2010

Halvorsen K, Wong WP. Massively parallel single-molecule manipulation using centrifugal force. Biophys J 2010;98(11):L53-5.

Fischer P, Salam A. Molecular QED of coherent and incoherent sum-frequency and second-harmonic generation in chiral liquids in the presence of a static electric field. Molecular Physics 2010;108(14):1857-1868.

Cheng D, Halvorsen K, Wong WP. Note: High-precision microsphere sorting using velocity sedimentation. Rev Sci Instrum 2010;81(2):026106.

Zoccolan D, Graham BJ, Cox DD. A self-calibrating, camera-based eye tracker for the recording of rodent eye movements. Front Neurosci 2010;4:193.

2009

de Bivort BL, Perlstein EO, Kunes S, Schreiber SL. Amino acid metabolic origin as an evolutionary influence on protein sequence in yeast. J Mol Evol 2009;68:490-7.

de Bivort BL, Guo H-FF, Zhong Y. Notch signaling is required for activity-dependent synaptic plasticity at the Drosophila neuromuscular junction. J Neurogenet 2009;23:395-404.

Clouse R, de Bivort BL, Giribet G. A phylogenetic analysis for the South-east Asian mite harvestman family Stylocellidae (Opiliones : Cyphophthalmi) – a combined analysis using morphometric and molecular data. Invertebrate Systematics 2009;23:515-529.

Bar-Yam Y, Harmon D, de Bivort B. Systems biology. Attractors and democratic dynamics. Science 2009;323:1016-7.

Vollmer F, Arnold S. Optical microcavities: single virus detection and nanoparticle trapping. Proc. of SPIE 2009;7397:739702.

Arnold S, Keng D, Shopova SI, Holler S, Zurawsky W, Vollmer F. Whispering gallery mode carousel–a photonic mechanism for enhanced nanoparticle detection in biosensing. Opt. Express 2009;17:6230-6238.

Koenderink GH, Dogic Z, Nakamura F, Bendix PM, MacKintosh FC, Hartwig JH, Stossel TP, Weitz DA. An active biopolymer network controlled by molecular motors. Proc Natl Acad Sci U S A 2009;106(36):15192-7.

Lau AWC, Prasad A, Dogic Z. Condensation of isolated semi-flexible filaments driven by depletion interactions. EPL 2009;87:48006.

Dong M, Husale S, Sahin O. Determination of protein structural flexibility by microsecond force spectroscopy. Nat Nanotechnol 2009;4(8):514-7.

Barry E, Dogic Z, Meyer RB, Pelcovits RA, Oldenbourg R. Direct measurement of the twist penetration length in a single smectic A layer of colloidal virus particles. J Phys Chem B 2009;113(12):3910-3.

Husale S, Persson HHJ, Sahin O. DNA nanomechanics allows direct digital detection of complementary DNA and microRNA targets. Nature 2009;462(7276):1075-8.

Topolancik J, Vollmer F, Ilic R, Crescimanno M. Out-of-plane scattering from vertically asymmetric photonic crystal slab waveguides with in-plane disorder. Opt Express 2009;17(15):12470-80.

Huang F, Addas K, Ward A, Flynn TN, Velasco E, Hagan MF, Dogic Z, Fraden S. Pair Potential of Charged Colloidal Stars. Phys. Rev. Lett. 2009;102:108302.

Wong WP, Halvorsen K. Beyond the frame rate: measuring high-frequency fluctuations with light-intensity modulation. Opt Lett 2009;34(3):277-9.

Mujica-Parodi L, Strey H, Frederick B, Savoy RL, Cox DD, Botanov Y, Tolkunov D, Rubin D, Weber J. Chemosensory Cues to Conspecific Emotional Stress Activate the Amygdala in Humans. PLoS One 2009;4(7):e6415.

Ghosh A, Fischer P. Controlled propulsion of artificial magnetic nanostructured propellers. Nano Lett 2009;9(6):2243-5.

Fratz M, Fischer P, Giel DM. Full phase and amplitude control in computer-generated holography. Opt Lett 2009;34(23):3659-61.

Pinto N, Doukhan D, DiCarlo JJ, Cox DD. A high-throughput screening approach to discovering good forms of biologically inspired visual representation. PLoS Comput Biol 2009;5(11):e1000579.

Pinto N, DiCarlo JJ, Cox DD. How far can you get with a modern face recognition test set using only simple features?. IEEE Computer Vision and Pattern Recognition 2009

Wong WP, Springer TA. Mechanoenzymatic cleavage of the ultralarge vascular protein, von Willebrand factor. Science 2009;324(5932):1330-1334.

Zoccolan D, Oertelt N, DiCarlo JJ, Cox DD. A rodent model for the study of invariant visual object recognition. Proc Natl Acad Sci U S A 2009;106(21):8748-53.

Li N, Cox DD, Zoccolan D, DiCarlo JJ. What response properties do individual neurons need to underlie position and clutter “invariant” object recognition?. J Neurophysiol 2009;102(1):360-76.

2008

Doh Y-J, Maher KN, Ouyang L, Chun YL, Park H, Park J. Electrically Driven Light Emission from Individual CdSe Nanowires. Nano Letters 2008;8(12):4552-4556.

Richards CT. The kinematic determinants of anuran swimming performance: an inverse and forward dynamics approach. J Exp Biol 2008;211(Pt 19):3181-94.

Vollmer F, Topolancik J. Disorder-induced high-Q cavities in photonic crystal waveguides . Proceedings of SPIE 2008;6872
Yang J, Heo J, Zhu T, Xu J, Topolancik J, Vollmer F, Ilic R, Bhattacharya P. Enhanced photoluminescence from embedded PbSe colloidal quantum dots in silicon-based random photonic crystal microcavities. Applied Physics Letters 2008;92:261110.

Vollmer F, Arnold S, Keng D. Single virus detection from the reactive shift of a whispering-gallery mode. Proceedings of the National Academy of Sciences 2008;105(208):20701-20704.

Gabrielse G, Larochelle P, Le Sage D, Levitt B, Klothammer WS, McConnell R, Richerme P, Wrubel J, Speck A, George MC, Grzonka D, Oelert W, Sefzick T, Zhang Z, Carew A, Comeau D, Hessels EA, Storry CH, Weel M, Walz J. Antihydrogen Production within a Penning-Ioffe Trap. Physical Review Letters 2008;100:113001.

Sahin O. Accessing Time-Varying Forces on the Vibrating Tip of the Dynamic Atomic Force Microscope to Map Material Composition. Israel Journal of Chemistry 2008;48:55-63.

Sahin O, Erina N. High-resolution and large dynamic range nanomechanical mapping in tapping-mode atomic force microscopy. Nanotechnology 2008;19(44):445717.

Lewis KC, Selzer T, Shahar C, Udi Y, Tworowski D, Sagi I. Inhibition of pectin methyl esterase activity by green tea catechins. Phytochemistry 2008;69(14):2586-92.

Sahin O. Probe microscopy: scanning below the cell surface. Nat Nanotechnol 2008;3(8):461-2. 2008_sahin_news_views.pdf
Bendix PM, Koenderink GH, Cuvelier D, Dogic Z, Koeleman BN, Brieher WM, Field CM, Mahadevan L, Weitz DA. A quantitative analysis of contractility in active cytoskeletal protein networks. Biophys J 2008;94(8):3126-36.

Sahin O. Time-varying tip-sample force measurements and steady-state dynamics in tapping-mode atomic force microscopy. Physical Review B 2008;77:115405.

Vollmer F, Arnold S. Whispering-gallery-mode biosensing: label-free detection down to single molecules. Nat Methods 2008;5(7):591-6.

Ghosh A, Sheridon NK, Fischer P. Voltage-Controllable Magnetic Composite Based on Multifunctional Polyethylene Microparticles. Small 2008;4(11):1956-1958.

Cox DD, Papanastassiou AM, Oreper D, Andken BB, DiCarlo JJ. High-resolution three-dimensional microelectrode brain mapping using stereo microfocal X-ray imaging. J Neurophysiol 2008;100(5):2966-76.

Cox DD, DiCarlo JJ. Does learned shape selectivity in inferior temporal cortex automatically generalize across retinal position?. J Neurosci 2008;28(40):10045-55.

Pinto N, DiCarlo JJ, Cox DD. Establishing Good Benchmarks and Baselines for Face Recognition. European Conference on Computer Vision, Workshop on Faces in Real Life Images 2008;Heinrich V, Wong WP, Halvorsen K, Evans E. Imaging biomolecular interactions by fast three-dimensional tracking of laser-confined carrier particles. Langmuir 2008;24(4):1194-203.

Pinto N, Cox DD, DiCarlo JJ. Why is real-world visual object recognition hard?. PLoS Comput Biol 2008;4(1):e27.

2007

Ahn Y, Tsen W, Kim B, Park Y-W, Park J. Photocurrent Imaging of p−n Junctionsin Ambipolar Carbon NanotubeTransistors. Nano letters 2007;7(11):3320-3323.

Richards CT, Biewener AA. Modulation of in vivo muscle power output during swimming in the African clawed frog (Xenopus laevis). J Exp Biol 2007;210(Pt 18):3147-59.

Topolancik J, Ilic B, Vollmer F. Experimental observation of strong photon localization in disordered photonic crystal waveguides. Physical Review Latters 2007;99

Topolancik J, Ilic B, Vollmer F. Experimental observation of strong photon localization in disordered photonic crystal waveguides. Physical Review Latters 2007;99

Topolancik J, Vollmer F, Ilic B. Random high-Q cavities in disordered photonic crystal waveguides. Applied Physics Letters 2007;91

Spicer R, Holbrook MN. Effects of carbon dioxide and oxygen on sapwood respiration in five temperate tree species. J Exp Bot 2007;58(6):1313-20.

Sahin O, Magonov S, Su C, Quate CF, Solgaard O. An atomic force microscope tip designed to measure time-varying nanomechanical forces. Nat Nanotechnol 2007;2(8):507-14.

Sahin O. Harnessing bifurcations in tapping-mode atomic force microscopy to calibrate time-varying tip-sample force measurements. Rev Sci Instrum 2007;78(10):103707.

Brangwynne CP, Koenderink GH, Barry E, Dogic Z, MacKintosh FC, Weitz DA. Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking. Biophys J 2007;93(1):346-59.

Speck A, Gabrielse G, Larochelle P, Le Sage D, Levitt B, Kolthammer WS, McConnell R, Wrubel J, Grzonka D, Oelert W, Sefzick T, Zhang Z, Comeau D, George MC, Hessels EA, Storry CH, Weel M, Walz J. Density and Geometry of Single Component Plasmas. Physics Letters B 2007;650:119-123.

Ren H-C, Vollmer F, Arnold S, Libchaber A. High-Q microsphere biosensor – analysis for adsorption of rodlike bacteria. Opt Express 2007;15(25):17410-23.

Lien V, Vollmer F. Microfluidic flow rate detection based on integrated optical fiber cantilever. Lab Chip 2007;7(10):1352-6.

Topolancik J, Vollmer F. Photoinduced transformations in bacteriorhodopsin membrane monitored with optical microcavities. Biophys J 2007;92(6):2223-9.

Ghosh A, Fazal FM, Fischer P. Circular differential double diffraction in chiral media. Opt Lett 2007;32(13):1836-8.Abstract
Ahn Y, Park J. Efficient Visible Light Detection Using Individual Germanium Nanowire Field Effect Transistors. Appl. Phys. Letts. 2007;91:162102.

Vollmer F, Fischer P. Frequency-domain displacement sensing with a fiber ring-resonator containing a variable gap. Sensors and Actuators A-Physical 2007;134(2):410-413.

Ghosh A, Hill W, Fischer P. Observation of the Faraday effect via beam deflection in a longitudinal magnetic field. Physical Review A 2007;76(5)

2006

Topolancik J, Vollmer F. All-optical switching in the near infrared with bacteriorhodopsin-coated microcavities. Applied Physics Letters 2006;89:184103.

Cebers A, Dogic Z, Janmey PA. Counterion-mediated attraction and kinks on loops of semiflexible polyelectrolyte bundles. Phys. Rev. Lett. 2006;96:247801.

Barry E, Hensel Z, Dogic Z, Shribak M, Oldenbourg R. Entropy-driven formation of a chiral liquid-crystalline phase of helical filaments. Phys Rev Lett 2006;96(1):018305.

Lewis KC, Bazzaz FA, Liao Q, Orians CM. Geographic patterns of herbivory and resource allocation to defense, growth, and reproduction in an invasive biennial, Alliaria petiolata. Oecologia 2006;148(3):384-95.

Dogic Z, Fraden S. Ordered phases of filamentous viruses. Curr. Opinion in Coll. & Inter. Sci. 2006;11:47-55.

Kang KG, Lettinga MP, Dogic Z, Dhont JKG. Vorticity banding in rodlike virus suspensions. Phys. Rev. E 2006;74:026307.

Fischer P, Champagne B. Nonlinear Optical Properties of Chiral Liquids: Electric-dipolar pseudoscalars in nonlinear optics. In: Challenges and Advances in Computational Chemistry and Physics. 2006 p. 359-381.

Ghosh A, Fischer P. Chiral molecules split light: Reflection and refraction in a chiral liquid. Phys Rev Lett 2006;97(17):173002.

Buckingham AD, Fischer P. Direct chiral discrimination in NMR spectroscopy. Chemical Physics 2006;324(1):111-116.
Wong WP, Halvorsen K. The effect of integration time on fluctuation measurements: calibrating an optical trap in the presence of motion blur. Opt Express 2006;14(25):12517-31.

Vollmer F, Fischer P. Ring-resonator-based frequency-domain optical activity measurements of a chiral liquid. Opt Lett 2006;31(4):453-5.

2005

Ahn Y, Dunning J, J. P. Scanning Photocurrent Imaging and Electronic Band Studies in Silicon Nanowire Field Effect Transistors. Nano Letters 2005;5(7):1367-1370.

Vollmer F. Taking detection to the limit. BIF Futura 2005;20:239.

Fischer P, Hache F. Nonlinear optical spectroscopy of chiral molecules. Chirality 2005;17(8):421-37.